Publications

Articles in international peer-reviewed journals

  • Khalifeh, D., Neveu E., and Fasshauer D. Megaviruses Contain Various Genes Encoding for Eukaryotic Vesicle Trafficking Factors. https://doi.org/10.1111/tra.12860 Traffic 23 (8): 414–25, 2022

  • Neveu, E., Khalifeh D., Salamin N., and Fasshauer D. Prototypic SNARE Proteins Are Encoded in the Genomes of Heimdallarchaeota, Potentially Bridging the Gap Between the Prokaryotes and Eukaryotes. https://doi.org/10.1016/j.cub.2020.04.060, Current Biology 30 (13): 2468–2480.e5, 2020.

  • Moroz, L.L., Romanova, D.Y., Nikitin, M.A. et al. The diversification and lineage-specific expansion of nitric oxide signaling in Placozoa: insights in the evolution of gaseous transmission. https://doi.org/10.1038/s41598-020-69851-w, Sci Rep 10 (1):13020, 2020

  • Neveu E., Popov P., Hoffmann A., Migliosi A., Besseron X, Danoy G., Bouvry P., Grudinin G. RapidRMSD: Rapid determination of RMSDs corresponding to motions of flexible molecules, https://doi.org/10.1093/bioinformatics/bty160, Bioinformatics 2018

  • Crawford, W. J., Moore, A. M., Jacox, M. G., Fiechter, J., Neveu, E., & Edwards, C. A. A resonant response of the California Current circulation to forcing by low frequency climate variability. https://doi.org/10.1016/j.dsr2.2017.07.016, Deep Sea Research Part II: Topical Studies in Oceanography 2017.

  • Neveu E., Grudinin S., Popov P., Ritchie D.W, PEPSI-DOCK: A Detailed Data-Driven Protein-Protein Interaction Potential Accelerated By Polar Fourier Correlation, doi: 10.1093/bioinformatics/btw443, Bioinformatics, 2016.

  • Lensink, M. et al. Prediction of homo- and hetero-protein complexes by ab-initio and template-based docking: a CASP- CAPRI experiment. doi: 10.1002/prot.25007 PROTEINS: Structure, Function, and Bioinformatics, 2016

  • Grudinin S., Popov P., Neveu E., Cheremovskiy G. Predicting binding poses and affinities in the CSAR 2013-2014 docking exercises using the knowledge-based Convex-PL potential. doi: 10.1021/acs.jcim.5b00339, J. Chem. Inf. Model., 2015.

  • Neveu E., et al. An Historical analysis of the California Current Circulation using ROMS 4D-Var. Part I: System Configuration and Diagnostics. doi: 10.1016/j.ocemod.2015.11.012, Ocean Modelling 2015.

  • Debreu L., Neveu E., Simon E., Le Dimet F. X., Vidard A. Multigrid solvers and multigrid preconditioners for the solution of variational data assimilation problems. doi: 10.1002/qj.2676, Quaterly Journal of the Royal Meteorological Society, 2015.

  • Neveu E., Debreu L, Le Dimet F-X. Multigrid Methods and Data Assimilation ― Convergence Study and First Experiments on Non-Linear Equations. Revue Africaine de Recherche En Informatique Et Mathématiques Appliquées Volume 14 - 2011 https://doi.org/10.46298/arima.1944

Book chapters

  • Moore A, Edwards C, Fiechter J, Drake P, Neveu E, Arango H G, Gürol S, Weaver A T. A 4D-Var Analysis System for the California Current: A Prototype for an Operational Regional Ocean Data Assimilation System. in Data Assimilation for Atmospheric, Oceanic and Hydrological Applications: Vol. II, Edition: 2013 ed., Chapter: 14, Publisher: Springer-Verlag Berlin and Heidelberg GmbH & Co. KG, Editors: Seon K. Park, Lian Xu, pp.345-366

  • Debreu L, Neveu E, Le Dimet F-X, Simon E. Multigrid algorithms and local mesh refinement methods in the context of variational data assimilation. Eric Blayo; Marc Bocquet; Emmanuel Cosme; F. Cugliandolo Leticia. Lecture notes of Les Houches summer school 2012, Oxford University Press, pp.576, 2014, 9780198723844.

Proceedings

  • Vidard A, Debreu L, Neveu E. MultiResolution Variational Data Assimilation Schemes With Application to a Realistic Ocean Model. 6th WMO Symposium on Data Assimilation, Oct 2013, College Park, United States.

  • Vidard A, Debreu L, Neveu E. Multi resolution variational data assimilation system for the ocean. EGU 2013 - European Geosciences Union General Assembly 2013, Apr 2013, Vienne, Austria.

  • Neveu E, Debreu L, Le Dimet F-X. Méthodes multigrilles pour le 4D-VAR. Colloque National sur l’Assimilation de Données, Dec 2010, Grenoble, France. 2010.

  • Neveu E, Debreu L, Le Dimet F-X. Multigrid methods and data assimilation applied to a linear advection equation. CARI’10 - African Conference on Research in Computer Science and Applied Mathematics, Oct 2010, Yamoussoukro, Côte d’Ivoire. 2010.

PhD

  • Applications des méthodes multigrilles à l’assimilation de données en géophysique. PDF, Université de Grenoble, 2011